Applications#

This page contains a list of examples on how to use CAREamics on real-world data or synthetic data. The examples are grouped by algorithm. Every example was generated from a Jupyter notebook, which is linked at the top of each page.

Noise2Void#

Mouse Nuclei

Denoising of 2D fluorescence images of nuclei with Noise2Void.

2D fluorescence

SEM

Denoising of 2D scanning electron microscopy with Noise2Void.

2D electron microscopy

Hagen

N2V on the AI4Life Denoising Challenge with structured noise.

2D fluorescence structured

Flywing

Denoising of 3D tissue using Noise2Void.

3D fluorescence tissue

SUPPORT

N2V on the AI4Life Denoising Challenge with structured noise.

3D fluorescence structured

JUMP

N2V on the AI4Life Denoising Challenge with unstructured noise.

2D channels fluorescence

W2S

N2V on the AI4Life Denoising Challenge with unstructured noise.

2D channels fluorescence

BSD68

Benchmark Noise2Void in 2D using natural images and synthetic noise.

2D benchmark

N2V2#

SEM

Denoising of 2D scanning electron microscopy with N2V2.

2D electron microscopy

BSD68

Benchmark N2V2 in 2D using natural images and synthetic noise.

2D benchmark

structN2V#

Convallaria

An example of using structN2V on the convallaria dataset.

2D fluorescence structN2V

Noise2Noise#

SEM

Denoising of 2D scanning electron microscopy with Noise2Noise.

2D electron microscopy

CARE#

denoising U2OS

Supervised denoising of nuclei imaged in 2D fluorescence with CARE.

2D fluorescence nuclei

Lightning API#

BSD68 N2V

Example of Noise2Void using the Lightning API with 2D natural images and synthetic noise.

2D benchmark N2V

To add notebooks to this section, refer to the guide.