in_memory_tiled_pred_dataset

class InMemoryTiledPredDataset(Dataset):
    """Prediction dataset storing data in memory and returning tiles of each image.

    Parameters
    ----------
    prediction_config : InferenceConfig
        Prediction configuration.
    inputs : NDArray
        Input data.
    """

    def __init__(
        self,
        prediction_config: InferenceConfig,
        inputs: NDArray,
    ) -> None:
        """Constructor.

        Parameters
        ----------
        prediction_config : InferenceConfig
            Prediction configuration.
        inputs : NDArray
            Input data.

        Raises
        ------
        ValueError
            If data_path is not a directory.
        """
        if (
            prediction_config.tile_size is None
            or prediction_config.tile_overlap is None
        ):
            raise ValueError(
                "Tile size and overlap must be provided to use the tiled prediction "
                "dataset."
            )

        self.pred_config = prediction_config
        self.input_array = inputs
        self.axes = self.pred_config.axes
        self.tile_size = prediction_config.tile_size
        self.tile_overlap = prediction_config.tile_overlap
        self.image_means = self.pred_config.image_means
        self.image_stds = self.pred_config.image_stds

        # Generate patches
        self.data = self._prepare_tiles()

        # get transforms
        self.patch_transform = Compose(
            transform_list=[
                NormalizeModel(image_means=self.image_means, image_stds=self.image_stds)
            ],
        )

    def _prepare_tiles(self) -> list[tuple[NDArray, TileInformation]]:
        """
        Iterate over data source and create an array of patches.

        Returns
        -------
        list of tuples of NDArray and TileInformation
            List of tiles and tile information.
        """
        # reshape array
        reshaped_sample = reshape_array(self.input_array, self.axes)

        # generate patches, which returns a generator
        patch_generator = extract_tiles(
            arr=reshaped_sample,
            tile_size=self.tile_size,
            overlaps=self.tile_overlap,
        )
        patches_list = list(patch_generator)

        if len(patches_list) == 0:
            raise ValueError("No tiles generated, ")

        return patches_list

    def __len__(self) -> int:
        """
        Return the length of the dataset.

        Returns
        -------
        int
            Length of the dataset.
        """
        return len(self.data)

    def __getitem__(self, index: int) -> tuple[NDArray, TileInformation]:
        """
        Return the patch corresponding to the provided index.

        Parameters
        ----------
        index : int
            Index of the patch to return.

        Returns
        -------
        tuple of NDArray and TileInformation
            Transformed patch.
        """
        tile_array, tile_info = self.data[index]

        # Apply transforms
        transformed_tile, _ = self.patch_transform(patch=tile_array)

        return transformed_tile, tile_info