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CAREamics
Multicrop Dset
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CAREamics
GitHub
Home
Installation
Installation
Install with uv
Install with mamba
Testing GPU support
Features
Guides
Guides
CAREamist API
CAREamist API
Configuration
Configuration
Convenience functions
Save and load
Custom types
Configuration errors
Build the configuration
Algorithm requirements
Using CAREamics
Using CAREamics
CAREamist
Training
(Intermediate) Datasets
Prediction
Export to BMZ
FAQ
Lightning API
Lightning API
napari plugin
napari plugin
Dev resources
Dev resources
Contribute to CAREamics
Github pages
Docstring conventions
Conda-forge package
API Reference
API Reference
Careamics
Careamist
Nm Training Placeholder
Cli
Cli
Conf
Main
Utils
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Config
Configuration
Configuration Factories
Algorithms
Algorithms
CARE Algorithm Config
HDN Algorithm Config
Microsplit Algorithm Config
N2N Algorithm Config
N2V Algorithm Config
PN2V Algorithm Config
UNet Algorithm Config
VAE Algorithm Config
Architectures
Architectures
Architecture Config
LVAE Config
UNet Config
Augmentations
Augmentations
N2V Manipulate Config
Normalize Config
Transform Config
Transform Unions
XY Flip Config
XY Random Rotate90 Config
Data
Data
Data Config
Inference Config
Normalization Config
Tile Information
Lightning
Lightning
Optimizer Configs
Training Config
Callbacks
Callbacks
Callback Config
Losses
Losses
Loss Config
Noise Model
Noise Model
Likelihood Config
Noise Model Config
Support
Support
Supported Activations
Supported Algorithms
Supported Architectures
Supported Data
Supported Filters
Supported Loggers
Supported Losses
Supported Normalization
Supported Optimizers
Supported Patching Strategies
Supported Pixel Manipulations
Supported Struct Axis
Supported Transforms
Utils
Utils
Configuration IO
Random
Validators
Validators
Axes Validators
Model Validators
Patch Validators
Dataset
Dataset
In Memory Dataset
In Memory Pred Dataset
In Memory Tiled Pred Dataset
Iterable Dataset
Iterable Pred Dataset
Iterable Tiled Pred Dataset
Dataset Utils
Dataset Utils
File Utils
Iterate Over Files
Running Stats
Patching
Patching
Patching
Random Patching
Sequential Patching
Validate Patch Dimension
Tiling
Tiling
Collate Tiles
LVAE Tiled Patching
Tiled Patching
File IO
File IO
Read
Read
Get Func
Tiff
Write
Write
Get Func
Tiff
Lightning
Lightning
Lightning Module
Microsplit Data Module
Predict Data Module
Train Data Module
Callbacks
Callbacks
Careamics Checkpoint Info Callback
Data Stats Callback
Hyperparameters Callback
Progress Bar Callback
Stop Prediction Callback
Prediction Writer Callback
Prediction Writer Callback
File Path Utils
Prediction Writer Callback
Write Strategy
Write Strategy Factory
Losses
Losses
Loss Factory
FCN
FCN
Losses
LVAE
LVAE
Loss Utils
Losses
LVAE Training
LVAE Training
Calibration
Eval Utils
Get Config
Lightning Module
Metrics
Train LVAE
Train Utils
Dataset
Dataset
Config
Lc Dataset
Ms Dataset Ref
Multich Dataset
Multicrop Dset
Multicrop Dset
On this page
multicrop_dset
Multifile Dataset
Types
Utils
Utils
Data Utils
Empty Patch Fetcher
Index Manager
Index Switcher
Model IO
Model IO
Bmz IO
Model IO Utils
Bioimage
Bioimage
Bioimage Utils
Cover Factory
Model Description
Models
Models
Activation
Layers
Model Factory
UNet
LVAE
LVAE
Layers
Likelihoods
LVAE
Noise Models
Stochastic
Utils
Prediction Utils
Prediction Utils
LVAE Prediction
LVAE Tiling Manager
Prediction Outputs
Stitch Prediction
Transforms
Transforms
Compose
N2V Manipulate
N2V Manipulate Torch
Normalize
Pixel Manipulation
Pixel Manipulation Torch
Struct Mask Parameters
Transform
TTA
XY Flip
XY Random Rotate90
Utils
Utils
Autocorrelation
Base Enum
Context
Deprecation
Lightning Utils
Logging
Metrics
Path Utils
Plotting
Ram
Receptive Field
Reshape Array
Serializers
Torch Utils
Version
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multicrop_dset
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API Reference
LVAE Training
Dataset
Multicrop Dset
Source
Here, we have multiple folders, each containing images of a single channel.
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