Bioimage

Bioimage Model Zoo format functions.

`create_env_text(pytorch_version, torchvision_version)`

Create environment yaml content for the bioimage model.

This installs an environment with the specified pytorch version and the latest changes to careamics.

Parameters:

Name	Type	Description	Default
`pytorch_version`	`str`	Pytorch version.	required
`torchvision_version`	`str`	Torchvision version.	required

Returns:

Type	Description
`str`	Environment text.

Create model description.

Parameters:

Name	Type	Description	Default
`config`	`Configuration`	CAREamics configuration.	required
`name`	`str`	Name of the model.	required
`general_description`	`str`	General description of the model.	required
`data_description`	`str`	Description of the data the model was trained on.	required
`authors`	`list[Author]`	Authors of the model.	required
`inputs`	`Union[Path, str]`	Path to input .npy file.	required
`outputs`	`Union[Path, str]`	Path to output .npy file.	required
`weights_path`	`Union[Path, str]`	Path to model weights.	required
`torch_version`	`str`	Pytorch version.	required
`careamics_version`	`str`	CAREamics version.	required
`config_path`	`Union[Path, str]`	Path to model configuration.	required
`env_path`	`Union[Path, str]`	Path to environment file.	required
`covers`	`list of pathlib.Path or str`	Paths to cover images.	required
`channel_names`	`Optional[list[str]]`	Channel names, by default None.	`None`
`model_version`	`str`	Model version.	`"0.1.0"`

Returns:

Type	Description
`ModelDescr`	Model description.

Return the relative path to the weights and configuration files.

Parameters:

Name	Type	Description	Default
`model_desc`	`ModelDescr`	Model description.	required

Returns:

Type	Description
`tuple of (path, path)`	Weights and configuration paths.

Generate unzipped folder path from the bioimage.io model path.

Parameters:

Name	Type	Description	Default
`zip_path`	`Path`	Path to the bioimage.io model.	required

Returns:

Type	Description
`Path`	Path to the unzipped folder.