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CAREamics
GitHub
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Installation
Installation
Install with uv
Install with mamba
Testing GPU support
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Using CAREamics
Using CAREamics
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Tutorials
Tutorials
Custom Data Formats
Implementing an Image Stack
Patch Filtering
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CAREamics UI
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FAQ
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API Reference
Careamics
Careamist
Config
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Algorithms
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XY Flip Config
XY Random Rotate90 Config
Data
Data
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Normalization Config
Patch Filter
Patch Filter
Mask Filter Config
Max Filter Config
Meanstd Filter Config
Patch Filter Config
Shannon Filter Config
Patching Strategies
Patching Strategies
Random Patching Config
Sequential Patching Config
Stratified Patching Config
Tiled Patching Config
Whole Patching Config
Factories
Factories
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CARE N2N Factory
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Training Factory
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Support
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Utils
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Image Region Data
Augmentation
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XY Flip
XY Random Rotate90
Factory
Factory
Factory
Filter Bg
Microsplit Factory
Val Split
Image Stack
Image Stack
Czi Image Stack
File Image Stack
Image Stack Protocol
In Memory Image Stack
Zarr Image Stack
Image Utils
Image Utils
Image Stack Utils
Image Stack Loader
Image Stack Loader
Image Stack Loader Protocol
Image Stack Loaders
Zarr Utils
Normalization
Normalization
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Normalization
Normalization Factory
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Running Quantile
Statistics
Utils
Patch Constructor
Patch Constructor
Basic Patch Constructor
Metadata Utils
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Patch Constructor
Patch Extractor
Patch Extractor
Limit File Extractor
Patch Extractor
Patch Filter
Patch Filter
Filtermap Utils
Mask Patch Filter
Max Patch Filter
Mean Std Patch Filter
Patch Filter
Patch Filter Factory
Shannon Patch Filter
Patching
Patching
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Patch Specs
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Patching Factory
Random Patching
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Tiled Patching
Whole Sample Patching
Image IO
Image IO
Read
Read
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Tiff
Write
Write
Get Func
Tiff
Lightning
Lightning
Grouped Index Sampler
Callbacks
Callbacks
Config Saver Callback
Data Stats Callback
Progress Bar Callback
Stop Prediction Callback
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File Path Utils
Image Write Strategy
Prediction Writer Callback
Tile Write Strategy
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Write Strategy Factory
Zarr Tile Write Strategy
Data
Data
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Index Manager
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Metrics
Metrics
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Psnr
Model IO
Model IO
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Bioimage
Bioimage
Bioimage Utils
Cover Factory
Model Description
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Models
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Constraints
Constraints
Model Constraints
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LVAE
LVAE
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LVAE
Noise Models
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Utils
Model Utils
Model Utils
Activation
UNet
UNet
Layers
UNet
References
References
CARE
CARE
Citations
Descriptions
N2N
N2N
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N2V
N2V
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PN2V
PN2V
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