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CAREamics
GitHub
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Installation
Installation
Install with uv
Install with mamba
Testing GPU support
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Using CAREamics
Using CAREamics
Configuration
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Tutorials
Tutorials
Custom Data Formats
Implementing an Image Stack
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CAREamics UI
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FAQ
API Reference
API Reference
Careamics
Careamist
Config
Config
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Algorithms
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Microsplit Algorithm Config
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N2V Manipulation
N2V Manipulation
N2V Manipulate Config
Architectures
Architectures
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LVAE Config
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Augmentations
Augmentations
Transform Unions
XY Flip Config
XY Random Rotate90 Config
Data
Data
Data Config
Microsplit Data Config
Normalization Config
Patch Filter
Patch Filter
Mask Filter Config
Max Filter Config
Meanstd Filter Config
Patch Filter Config
Shannon Filter Config
Patching Strategies
Patching Strategies
Random Patching Config
Sequential Patching Config
Stratified Patching Config
Tiled Patching Config
Whole Patching Config
Factories
Factories
Algorithm Factory
CARE N2N Factory
Config Discriminators
Data Factory
N2V Factory
Training Factory
Lightning
Lightning
Optimizer Configs
Parameters Filter
Training Configuration
Losses
Losses
Loss Config
Noise Model
Noise Model
Likelihood Config
Noise Model Config
Serializers
Support
Support
Supported Activations
Supported Algorithms
Supported Architectures
Supported Data
Supported Filters
Supported Loggers
Supported Losses
Supported Normalization
Supported Optimizers
Supported Patching
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Supported Struct Axis
Supported Transforms
Utils
Utils
Configuration IO
Random
Validators
Validators
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Patch Validators
Dataset
Dataset
Dataset
Image Region Data
Augmentation
Augmentation
Compose
Transform
XY Flip
XY Random Rotate90
Factory
Factory
Factory
Filter Bg
Microsplit Factory
Val Split
Image Stack
Image Stack
Czi Image Stack
File Image Stack
Image Stack Protocol
In Memory Image Stack
Zarr Image Stack
Image Utils
Image Utils
Image Stack Utils
Image Stack Loader
Image Stack Loader
Image Stack Loader Protocol
Image Stack Loaders
Zarr Utils
Normalization
Normalization
Mean Std Normalization
No Normalization
Normalization
Normalization Factory
Range Normalization
Running Mean Std
Running Quantile
Statistics
Utils
Patch Constructor
Patch Constructor
Basic Patch Constructor
Metadata Utils
Microsplit Patch Constructors
Patch Constructor
Patch Extractor
Patch Extractor
Limit File Extractor
Patch Extractor
Patch Filter
Patch Filter
Filtermap Utils
Mask Patch Filter
Max Patch Filter
Mean Std Patch Filter
Patch Filter
Patch Filter Factory
Shannon Patch Filter
Patching
Patching
Fixed Patching
Patch Specs
Patching
Patching Factory
Random Patching
Sequential Patching
Stratified Patching
Tiled Patching
Whole Sample Patching
Image IO
Image IO
Read
Read
Get Func
Tiff
Write
Write
Get Func
Tiff
Lightning
Lightning
Grouped Index Sampler
Callbacks
Callbacks
Config Saver Callback
Data Stats Callback
Progress Bar Callback
Stop Prediction Callback
Prediction
Prediction
File Path Utils
Image Write Strategy
Prediction Writer Callback
Tile Write Strategy
Write Strategy
Write Strategy Factory
Zarr Tile Write Strategy
Data
Data
Data Module
Data Module Utils
Grouped Index Sampler
Microsplit Data Module
Modules
Modules
CARE Module
Get Module
Module Utils
N2V Module
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N2V Utils
N2V Manipulate
Pixel Manipulation
Prediction
Prediction
Convert Prediction
Stitch Prediction
LVAE
LVAE
LVAE Convert Outputs
LVAE Prediction
LVAE Stitch Prediction
LVAE Tiling Manager
Utils
Utils
Csv Logger
Load Checkpoint
Losses
Losses
N2V Losses
LVAE
LVAE
Loss Utils
LVAE Loss Factory
LVAE Losses
LVAE Training
LVAE Training
Calibration
Get Config
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Metrics
Train LVAE
Train Utils
Dataset
Dataset
Config
Lc Dataset
Ms Dataset Ref
Multich Dataset
Multicrop Dset
Multifile Dataset
Types
Utils
Utils
Data Utils
Empty Patch Fetcher
Index Manager
Index Switcher
Metrics
Metrics
Metrics
Psnr
Model IO
Model IO
Bmz IO
Model IO Utils
Bioimage
Bioimage
Bioimage Utils
Cover Factory
Model Description
Models
Models
Model Factory
Constraints
Constraints
Model Constraints
Model Constraints Factory
UNet Constraints
LVAE
LVAE
Layers
Likelihoods
LVAE
Noise Models
Stochastic
Utils
Model Utils
Model Utils
Activation
UNet
UNet
Layers
UNet
References
References
CARE
CARE
Citations
Descriptions
N2N
N2N
Citations
Descriptions
Descriptions
On this page
descriptions
N2V
N2V
Citations
Descriptions
PN2V
PN2V
Citations
Descriptions
Utils
Utils
Autocorrelation
Context
Deprecation
Folder Versioning
Get Device
Logging
Plotting
Ram
Reshape Array
Version
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CAREamics N2N model descriptions.
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