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CAREamics
GitHub
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Installation
Installation
Install with uv
Install with mamba
Testing GPU support
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Using CAREamics
Using CAREamics
Configuration
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Tutorials
Tutorials
Custom Data Formats
Implementing an Image Stack
Patch Filtering
Logging with WandB and TensorBoard
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CAREamics UI
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FAQ
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API Reference
Careamics
Careamist
Config
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Algorithms
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N2V Manipulate Config
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Architectures
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Augmentations
Augmentations
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XY Flip Config
XY Random Rotate90 Config
Data
Data
Data Config
Microsplit Data Config
Normalization Config
Patch Filter
Patch Filter
Mask Filter Config
Max Filter Config
Meanstd Filter Config
Patch Filter Config
Shannon Filter Config
Patching Strategies
Patching Strategies
Random Patching Config
Sequential Patching Config
Stratified Patching Config
Tiled Patching Config
Whole Patching Config
Factories
Factories
Algorithm Factory
CARE N2N Factory
Config Discriminators
Data Factory
N2V Factory
Training Factory
Lightning
Lightning
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Parameters Filter
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Losses
Losses
Loss Config
Noise Model
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Likelihood Config
Noise Model Config
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Support
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Utils
Utils
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Validators
Validators
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Patch Validators
Dataset
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Image Region Data
Augmentation
Augmentation
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XY Flip
XY Random Rotate90
Factory
Factory
Factory
Filter Bg
Microsplit Factory
Val Split
Image Stack
Image Stack
Czi Image Stack
File Image Stack
Image Stack Protocol
In Memory Image Stack
Zarr Image Stack
Image Utils
Image Utils
Image Stack Utils
Image Stack Loader
Image Stack Loader
Image Stack Loader Protocol
Image Stack Loaders
Zarr Utils
Normalization
Normalization
Mean Std Normalization
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Normalization
Normalization Factory
Range Normalization
Running Mean Std
Running Quantile
Statistics
Utils
Patch Constructor
Patch Constructor
Basic Patch Constructor
Metadata Utils
Microsplit Patch Constructors
Patch Constructor
Patch Extractor
Patch Extractor
Limit File Extractor
Patch Extractor
Patch Filter
Patch Filter
Filtermap Utils
Mask Patch Filter
Max Patch Filter
Mean Std Patch Filter
Patch Filter
Patch Filter Factory
Shannon Patch Filter
Patching
Patching
Fixed Patching
Patch Specs
Patching
Patching Factory
Random Patching
Sequential Patching
Stratified Patching
Tiled Patching
Whole Sample Patching
Image IO
Image IO
Read
Read
Get Func
Tiff
Write
Write
Get Func
Tiff
Lightning
Lightning
Grouped Index Sampler
Callbacks
Callbacks
Config Saver Callback
Data Stats Callback
Progress Bar Callback
Stop Prediction Callback
Prediction
Prediction
File Path Utils
Image Write Strategy
Prediction Writer Callback
Tile Write Strategy
Write Strategy
Write Strategy Factory
Zarr Tile Write Strategy
Data
Data
Data Module
Data Module Utils
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Microsplit Data Module
Modules
Modules
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N2V Utils
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Prediction
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Utils
Csv Logger
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LVAE
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Utils
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Empty Patch Fetcher
Index Manager
Index Switcher
Metrics
Metrics
Metrics
Psnr
Model IO
Model IO
Bmz IO
Model IO Utils
Bioimage
Bioimage
Bioimage Utils
Cover Factory
Model Description
Models
Models
Model Factory
Constraints
Constraints
Model Constraints
Model Constraints Factory
UNet Constraints
LVAE
LVAE
Layers
Likelihoods
LVAE
Noise Models
Stochastic
Utils
Model Utils
Model Utils
Activation
UNet
UNet
Layers
UNet
References
References
CARE
CARE
Citations
Descriptions
N2N
N2N
Citations
Descriptions
N2V
N2V
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PN2V
PN2V
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Utils
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